PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.073190.1
Common NameCsa_2G428380, WRKY14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 295aa    MW: 31737.8 Da    PI: 10.0968
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.073190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32223280359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++dp+++++tYeg+Hnh+
  Cucsa.073190.1 223 DDYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERASDDPSMLIVTYEGDHNHS 280
                     99************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.2E-17172219IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-34209281IPR003657WRKY domain
PROSITE profilePS5081131.135216282IPR003657WRKY domain
SuperFamilySSF1182902.22E-27217281IPR003657WRKY domain
SMARTSM007742.4E-38221281IPR003657WRKY domain
PfamPF031061.7E-27223279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAVELLSGFT NAPQLSSRSP MDQDSAVQEA ASGLDTLKKL VTLLSHSPPS NLDSDCQAVA  60
NAAVSHFRKA ISLLGRSSRT GHARFRRAPL DSSKIYNATP IQQIPPPSLD RLDSATTINF  120
SYSTAPTSSF LTSLPASDSE IKLQHQPSSS SFQITDLSRV SSVVSKPSSG LKRKCGSENL  180
GSGKCAGSSG GRCHCSKKSR KLRLKRVVRV PAISSKNADI PPDDYSWRKY GQKPIKGSPY  240
PRGYYKCSSL RGCPARKHVE RASDDPSMLI VTYEGDHNHS QSVAEASSLI LESW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-222192791271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840150.0GU984015.1 Cucumis sativus WRKY protein (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648567.10.0PREDICTED: probable WRKY transcription factor 15-like isoform X1
SwissprotO221763e-81WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLE7CEW40.0E7CEW4_CUCSA; Uncharacterized protein
STRINGGLYMA01G39600.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-70WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]